Trainings and Tutorials

Contents:

• Data Collection Form Structure
  • Example: Arc melting data collection form
  • Other functions
  • Summary
• Carta Collections
  • Initial Setup
  • Using Collections
    • Access and sign-in
    • Project Home Page
    • Sign Out
• Seven Bridges Documentation
  • Running an Existing Seven Bridges Tool
    • PREREQUISITES
    • OVERVIEW
    • STEP-BY-STEP INSTRUCTIONS
    • TROUBLESHOOTING
  • Turning Your Code into a Seven Bridges Tool
    • PREREQUISITES
    • STEP-BY-STEP INSTRUCTIONS
    • TROUBLESHOOTING
  • Storing and Using Secrets in Seven Bridges
    • PREREQUISITES
    • UPLOADING SECRETS
    • WHITELISTING AN APP FOR USE
• Deploy a Command-Line Tool on Seven Bridges
  • Introduction
  • Build the Tool
    • Create the Tool
    • Register the Docker Image
    • Set the Arguments and Input Ports
    • Update the Tool
  • Use the Tool
    • Configure the Secret
    • Run the Tool
  • Summary
    • Steps
• Build Command Line Interface for Python code
  • Introduction
    • What is CLI and why we need it?
    • Designing the CLI
    • Implementing the CLI with argparse library
• Using the aimpf library
  • Clone Repository
  • Configure environment
  • Authenticate with CartaAgent
  • Data hierarchy
    • 1. Resources
    • 2. Databases
    • 3. Tables
    • 4. Columns
    • 5. Records
  • Using the dispatcher
    • Initialize the dispatcher
    • Using Dispatcher Functions
    • Check Status
    • Database metadata
    • Distinct values
    • Count records
    • List records
• Set up MQTT publisher and subscriber
  • Introduction to MQTT
    • Key Concepts
  • Setting Up MQTT with AWS IoT Core
    • Step 1: Create an IoT Thing
    • Step 2: Generate Certificates
    • Step 3: Setting Up MQTT Publisher and Subscriber
    • Step 4: Testing
    • Conclusion
• Running MATLAB on Seven Bridges
  • Introduction
  • Prepare MATLAB Docker Container
    • mathworks/matlab:r2024b
    • images.sbgenomics.com/contextualize/matlab_cchen886:0.1.1
    • images.sbgenomics.com/contextualize/matlab_cchen886:0.1.2
    • images.sbgenomics.com/contextualize/matlab_cchen886:0.1.3
  • Configure the App on SB
    • Prerequisites
    • Step-by-Step Instructions
    • Explanation of the Logic
    • Testing the App
    • Additional Caveats
  • Conclusion
  • Additional Resources
• Package MATLAB Code for Public Use
  • Package MATLAB Standalone Applications into Docker Images
  • Create Microservice Docker Image